Question: Getting PFAM database
0
gravatar for s.kyungyong64
3.5 years ago by
Berkeley, USA
s.kyungyong6430 wrote:

Hi,

I am trying to run PFAM locally. I need to download some databases from the website: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/ But there are too many files and I am not so sure which to download. All I want to do is to get the multi-domain architecture of my fungal protein sequences. Does anyone have any idea which databases I would need to download?

Thanks in advance!

sequence • 3.7k views
ADD COMMENTlink modified 3.5 years ago by cschu1812.4k • written 3.5 years ago by s.kyungyong6430
6
gravatar for cschu181
3.5 years ago by
cschu1812.4k
cschu1812.4k wrote:

Assuming you want to run hmmer on it: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.gz.

ADD COMMENTlink written 3.5 years ago by cschu1812.4k
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