Question: Getting PFAM database
0
gravatar for s.kyungyong64
19 months ago by
Berkeley, USA
s.kyungyong6410 wrote:

Hi,

I am trying to run PFAM locally. I need to download some databases from the website: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/ But there are too many files and I am not so sure which to download. All I want to do is to get the multi-domain architecture of my fungal protein sequences. Does anyone have any idea which databases I would need to download?

Thanks in advance!

sequence • 1.5k views
ADD COMMENTlink modified 19 months ago by cschu1811.4k • written 19 months ago by s.kyungyong6410
5
gravatar for cschu181
19 months ago by
cschu1811.4k
cschu1811.4k wrote:

Assuming you want to run hmmer on it: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.gz.

ADD COMMENTlink written 19 months ago by cschu1811.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1936 users visited in the last hour