Question: What is the meaning of extra dot in Refseq transcript ID (annotated by SnpEff 4.3i)?
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gravatar for ed.liaw
2.6 years ago by
ed.liaw90
ed.liaw90 wrote:

I'm using SnpEff 4.3i with the latest hg38 database (from 2016-10-27 on Sourceforge).

Some of the transcripts in the annotated output have an extra dot and number, e.g. NM_033467.3.2 (example below). I wasn't able to find documentation on what this extra number means, and it doesn't seem to be standard for Refseq IDs. Anyone have a clue?

chr1    2592284 .       C       T       91.0    PASS    SNVSB=-8.2;SNVHPOL=5;ANN=T|intron_variant|MODIFIER|MMEL1|MMEL1.2|transcript|NM_033467.3.2|protein_coding|21/23|c.2068-257G>A|||||| GT:GQ:GQX:DP:DPF:AD     0/1:124:91:24:5:13,11
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by ed.liaw90
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