Question: What is the meaning of extra dot in Refseq transcript ID (annotated by SnpEff 4.3i)?
gravatar for ed.liaw
3.4 years ago by
ed.liaw90 wrote:

I'm using SnpEff 4.3i with the latest hg38 database (from 2016-10-27 on Sourceforge).

Some of the transcripts in the annotated output have an extra dot and number, e.g. NM_033467.3.2 (example below). I wasn't able to find documentation on what this extra number means, and it doesn't seem to be standard for Refseq IDs. Anyone have a clue?

chr1    2592284 .       C       T       91.0    PASS    SNVSB=-8.2;SNVHPOL=5;ANN=T|intron_variant|MODIFIER|MMEL1|MMEL1.2|transcript|NM_033467.3.2|protein_coding|21/23|c.2068-257G>A|||||| GT:GQ:GQX:DP:DPF:AD     0/1:124:91:24:5:13,11
ADD COMMENTlink modified 3.4 years ago • written 3.4 years ago by ed.liaw90
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1091 users visited in the last hour