Question: circos plot tiles outside the cytogenetic bands
0
gravatar for User000
2.5 years ago by
User000270
User000270 wrote:

Hello,

Is there a way to plot the tiles outside the cytogenetic bands in Circos plot? If I change the radius the whole ideogram becomes small...Thanks for any tips

circos • 817 views
ADD COMMENTlink modified 2.5 years ago by cschu1811.8k • written 2.5 years ago by User000270
2
gravatar for cschu181
2.5 years ago by
cschu1811.8k
cschu1811.8k wrote:

Give the plots a radius > 1.

<plot>

show  = yes
type  = histogram

file  = bp_per_bin.txt
r1    = 1.15r # <- here
r0    = 1.1r  # <- and here
max   = 5000000
min   = 0.0

glyph            = rectangle
glyph_size       = 15
color            = red
stroke_color     = dred
stroke_thickness = 8

</plot>
ADD COMMENTlink written 2.5 years ago by cschu1811.8k

with the ideogram radius = 0.9r is OK?If I plot tiles >1 then I dont see some tiles, they are outside the image....Also, there remains a space between my ideogram and 1st heatmap...

ADD REPLYlink modified 2.5 years ago • written 2.5 years ago by User000270
1

I have an ideogram radius of 0.65r - it's the plot in this publication http://biorxiv.org/content/early/2016/10/13/080796.

ADD REPLYlink written 2.5 years ago by cschu1811.8k

ok, now I got it! thanks!

ADD REPLYlink written 2.5 years ago by User000270
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