SNPEff error on Galaxy cloud deployed instance, how to fix?
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4.4 years ago
genome21 ▴ 10

Whenever I run SNPEff on Galaxy cloud deployed instance I get:

/home/galaxy/galaxy/database/jobs_directory/000/32/tool_script.sh: line 9: java: command not found

How Java should be configured on the host computer?

snpeff galaxy java • 911 views
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It should be somewhere in the PATH. However I'd suggest posting on the Galaxy biostar.

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