Question: SNPEff error on Galaxy cloud deployed instance, how to fix?
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gravatar for genome21
2.2 years ago by
genome2110
genome2110 wrote:

Whenever I run SNPEff on Galaxy cloud deployed instance I get:

/home/galaxy/galaxy/database/jobs_directory/000/32/tool_script.sh: line 9: java: command not found

How Java should be configured on the host computer?

snpeff galaxy java • 573 views
ADD COMMENTlink written 2.2 years ago by genome2110

It should be somewhere in the PATH. However I'd suggest posting on the Galaxy biostar.

ADD REPLYlink written 2.2 years ago by Devon Ryan90k
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