download gene expression data
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5.8 years ago
debitboro ▴ 250

Hi all,

Is there any way to download gene expression data for ER+ Breast Cancer as a matrix of count per genes per samples ?

thanks

gene expression download • 2.2k views
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Entering edit mode
5.8 years ago
vakul.mohanty ▴ 260

GDC (https://gdc-portal.nci.nih.gov/) has breast cancer data from TCGA. You can get the data from there. I think the metadata file of the sample or the clinical data from the breast cancer data have some data whether the sample is ER+ or not. This should help you identify the subset of samples you are interested in. Alternatively you can also search the GEO (https://www.ncbi.nlm.nih.gov/geo/) for a ER+ breast cancer dataset. Hope that helps, Cheers!

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