Question: cufflink issues in Tuxedo protocol
gravatar for krushnach80
3.7 years ago by
krushnach80850 wrote:

It seems to me that cufflinks is taking long time to assemble the transcript, but I have tested the same transcript with StringTie it taking fraction of what cufflinks is taking. So my question is it good to use StringTie and then use the output for downstream tuxedo protocol analysis or I have keep the tuxedo protocol intact .would it make a difference in the final result if I use stringTie , I suppose it will but how drastic would it be?

Any suggestion or help would be highly appreciated

rna-seq • 952 views
ADD COMMENTlink modified 3.7 years ago by WouterDeCoster44k • written 3.7 years ago by krushnach80850
gravatar for WouterDeCoster
3.7 years ago by
WouterDeCoster44k wrote:

The Tuxedo protocol has been updated to use HISAT, Stringtie and ballgown so you can all stop using Tophat and Cufflinks.

ADD COMMENTlink written 3.7 years ago by WouterDeCoster44k
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