Entering edit mode
7.1 years ago
noeD
▴
130
Hello :)
I have smallRNA sequencing data and I am looking for developing a pipeline. I want to analyze not only miRNA but also the other sncRNAs.
I have read some papers in which the authors have started with align the reads against known miRNA from miRBase; after that they took the unaligned reads and they aligned them against various sncRNA libraries.
Could you suggest an aligner for my aim? Do you think that is it a good choice to align before against miRNA database and after that against the others libraries?
Thank you in advance!
Best regards
