How can you find PCR duplicates in ddRAD-seq data?
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7.0 years ago
carlopecoraro2 ★ 2.4k

PCR duplicates is one of the main bias in RAD-Sequencing and as far as I know they cannot be identified because the fragments sequenced are not randomly sheared. Does someone know a possible way to identity them in ddRAD-seq data? Many thanks in advance!

next-gen SNP • 1.5k views
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