Closed:OMA BUG: Disabling Hierarchical Groups Calculation
0
0
Entering edit mode
7.1 years ago
ba1 • 0

OMA Stand-alone v 2.0.0

in parameters.drw if you set according to description:

_# Infer the Hierarchical Orthologous Groups (HOGs)? 
_# In OMA standalone prior to 2.0 you can activate the inference of HOGs 
_# through the Top-Down algorithm by setting 'DoHierarchicalGroup' to 'true'. 
_# Since 2.0, you should set it to 'top-down' or 'bottom-up'. The later is 
_# as of now still an experimental feature, where as 'top-down' uses the 
_# algorithm of before. You can disable the HOG computation by setting it to  
_# 'false'. 
_#DoHierarchicalGroups := 'top-down';
DoHierarchicalGroups := 'false';

, you get following (presumably) critical errors and calculation halts :

DoHierarchicalGroups should be 'top-down' or 'bottom-up', not 'false'.
Error, (in _check_HOG_params)

if you uncomment the DoHierarchicalGroups parameter you get:

Error, (in _check_HOG_params) DoHierarchicalGroups should be 'top-down' or 'bottom-up', not 'dohierarchicalgroups'.
sequence software error • 246 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 2576 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6