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7.1 years ago
ba1
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OMA Stand-alone v 2.0.0
in parameters.drw if you set according to description:
_# Infer the Hierarchical Orthologous Groups (HOGs)?
_# In OMA standalone prior to 2.0 you can activate the inference of HOGs
_# through the Top-Down algorithm by setting 'DoHierarchicalGroup' to 'true'.
_# Since 2.0, you should set it to 'top-down' or 'bottom-up'. The later is
_# as of now still an experimental feature, where as 'top-down' uses the
_# algorithm of before. You can disable the HOG computation by setting it to
_# 'false'.
_#DoHierarchicalGroups := 'top-down';
DoHierarchicalGroups := 'false';
, you get following (presumably) critical errors and calculation halts :
DoHierarchicalGroups should be 'top-down' or 'bottom-up', not 'false'.
Error, (in _check_HOG_params)
if you uncomment the DoHierarchicalGroups parameter you get:
Error, (in _check_HOG_params) DoHierarchicalGroups should be 'top-down' or 'bottom-up', not 'dohierarchicalgroups'.