Can ABSOLUTE be used on Illumina 450k array copy number variation data?
0
0
Entering edit mode
4.1 years ago
n.verburg • 0

Dear all,

Does anyone know if it is possible to run the ABSOLUTE algorithm on copy number data derived from a Illumina 450k bead array (by using ChAMP or conumee package)?

I have tried to run the R version of ABSOLUTE and the GenePattern site but they only allow the select a SNP array.

Thank you.

Best,

Niels Verburg, MD PhD candidate Neurosurgical resident VU university medical center, Amsterdam, The Netherlands

ABSOLUTE tumor 450 copy number variation • 1.2k views
ADD COMMENT
0
Entering edit mode

Yes - I think that this should be possible. Please see a related question: Ploidy Analysis in R

ADD REPLY

Login before adding your answer.

Traffic: 1625 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6