Question: VCF to binary files
0
gravatar for dr.kthiha82
2.2 years ago by
dr.kthiha820 wrote:

Hi everyone. I am newbie in bioinformatics, PLINK and bio linux. Now I've CNV, genome, genotyping, Indels, SNPs, SV files in .vcf format. I would like to convert these file into .map and .ped formats. For .ped I need 6 columns and I knew that I had to create myself in biolinux(is it right?). I need help to enlighten me how to proceed. I have been trapped in this state for 3 days now and I still can't find a clue.

snp • 1.2k views
ADD COMMENTlink modified 2.2 years ago by Macspider2.8k • written 2.2 years ago by dr.kthiha820
3
gravatar for Macspider
2.2 years ago by
Macspider2.8k
Vienna - BOKU
Macspider2.8k wrote:

There was already this question on BioStars some time ago. Hope it helps! converting vcf file to plink ped/map format while filtering the snps

ADD COMMENTlink written 2.2 years ago by Macspider2.8k

Thank you for the information.

ADD REPLYlink written 2.2 years ago by dr.kthiha820
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 843 users visited in the last hour