X chromosome CNV analysis

Question

[neks]

Hello,

I am doing targeted DNA sequencing on the X chromosome and I would like to know if it is possible to analyse this sequencing data to detect Copy Number Variants.

Thank you

Answer 1

[IP]

CNVkit will do the thing, but be aware that for CNV analysis, sequencing of the whole chromosome will give you more reliable results.

[neks]

Thank you Iñigo. I will try it.