Hi all, I have a CSV file that includes gene names in different formats for example: PD-L1 might be written as PDL1 or PD-L1 or PDL-1 but i want to standardize all of these to HGNC symbols using python code. Can anyone tell me how should I go about it. I know how to do it for just one gene name ( i can manually look for the symbol in HGNC and replace it) But my issue is I might have many gene names. So i want the code to look for the gene name in my csv file and automatically fetch the HGNC symbol for it and replace the existing value with HGNC symbol. Any help would be deeply appreciated. Thank you :)
Question: Python Code to standardize gene name in CSV file
12 months ago by
Bioinformatician_in_trouble • 10 wrote:
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