From PHASE to HaploView
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4.5 years ago

I finally built a PHASE input file (.inp) and my analysis was executed successfully.

Now I have phased output which consists of several files:

  • test4.out_freqs : haplotype frequency estimates
  • test4.out_pairs : most likely haplotype pairs for each individual
  • test4.out_recom : estimates of recombination parameters
  • test4.out_monitor : file for monitoring convergence

I would like to visualize the haplotypes with HaploView.

Is there any tool or script which converts the output from PHASE to any HaploView format?

Phase HaploView Phasing Haplotypes Visualization • 1.7k views
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Hello, Were you able to find a solution for this? I am also trying to do the same thing. Thanks, Janet

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