Question: From PHASE to HaploView
gravatar for veronicaschroeder78
3.9 years ago by
veronicaschroeder78110 wrote:

I finally built a PHASE input file (.inp) and my analysis was executed successfully.

Now I have phased output which consists of several files:

  • test4.out_freqs : haplotype frequency estimates
  • test4.out_pairs : most likely haplotype pairs for each individual
  • test4.out_recom : estimates of recombination parameters
  • test4.out_monitor : file for monitoring convergence

I would like to visualize the haplotypes with HaploView.

Is there any tool or script which converts the output from PHASE to any HaploView format?

ADD COMMENTlink written 3.9 years ago by veronicaschroeder78110

Hello, Were you able to find a solution for this? I am also trying to do the same thing. Thanks, Janet

ADD REPLYlink written 16 months ago by janetw0
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