How to assign star alleles for CYP2D6 when we have only the results of SNPs except for CYP2D6*5?
0
0
Entering edit mode
7.1 years ago
khn ▴ 130

Hello,

I am trying to assign star alleles for CYP2D6, but I have results of tag SNPs only. I have files of info, and dose, and also created the files of bed, bim, and fam from them (no fastq files).

Can anybody please tell me how to assign star alleles for 1800 patients for CYP2D6? I know the limitations of assigning only from tag SNPs, but I just want to tell which patients are PMs and how much they have significant toxicities comared with patients who are not PMs? I think that it is impossible to assign accurately by PHASE.

Thank you in advance!

SNP genome gene • 1.1k views
ADD COMMENT

Login before adding your answer.

Traffic: 2916 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6