Hello guys, I have transcriptome data from low temperature treated samples with different time length. And I got different number of DEGs for each time point of strass challenge. Now I want to cluster all these differentially expressed genes. In some papers they did this analysis by heatmap based on genes’ foldchage, and others do this on RPKM value. How can I do the cluster? Is there any good tools and papers? Should I do the cluster on log2 (foldchage) or RPKM value ?
Question: How to cluster differential expressed genes from RNA-seq analysis?
2.9 years ago by
Kurban • 170
china/Urumqi/xinjiang academy of animal scinces
Kurban • 170 wrote:
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