Grow/shrink ranges in bed file to a specified length
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5.2 years ago
boczniak767 ▴ 830

Is there any tool which can make entries in bed file equal length?

I've checked bedtools slop but it's not what I'm looking for.

The goal is to get fasta file with equal-sized sequences, but I've to start with bed file with my coordinates.

bed • 1.9k views
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Wouldn't awk work?

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5.2 years ago
awk -F '\t' '{X=10000; mid=(int($2)+int($3))/2;printf("%s\t%d\t%d\n",$1,(mid-X<0?0:mid-X),mid+X);}'

??

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