Question: How to retrieve all hmm from TIGRFAM for Cas (CRISPR-associated) proteins?
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gravatar for mschmid
16 months ago by
mschmid90
Switzerland
mschmid90 wrote:

What is the most easy way to get all hmm models for Cas proteins from TIGRFAM? (or/and other database)

Or ist there another ressource you recommend?

Basically, I want to search for Cas proteins in a couple of genomes and I don't want to just trust the annotation.

cas hmm crispr • 539 views
ADD COMMENTlink modified 16 months ago by Jean-Karim Heriche16k • written 16 months ago by mschmid90
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gravatar for Jean-Karim Heriche
16 months ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche16k wrote:

You can get HMMs from TIGRFAMs ftp site and from PFAM's ftp site.

ADD COMMENTlink written 16 months ago by Jean-Karim Heriche16k

Thx! I found this already. What I was looking for is a classification where I can pick "CRISPR-associated group" and make sure that I get all Cas protein models but ONLY cas protein models. Idealy I don't have to manually sort stuff after a search...

ADD REPLYlink modified 16 months ago • written 16 months ago by mschmid90
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