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• Sliding window using gene position file
  I have a file of genes with RPKM values and their position along a chromosome Gene rpkm chr st...
• Default Plink Window size?
  Hello all, I have been looking at tagging SNPs based on r2 values > .7 and using a variety...
• Create table with 1MB bin size and compute the gene density
  Hi I want to create a table with chromosomes bins of 1Mb size and compute the density of expre...
• Detecting expression in intergenic regions
  **Background** We observed some RNA-seq coverage in regions outside annotated genes - let's call...
• How to set the size of window for calculating Fst?
  Hello, I am trying to determine the window size to calculate Fst between two populations at each ...
• Visualizing the position of many genes a time
  Hi all, I have a family of genes (over 400 seperate genes) and I want to visualize their positio...
• Smoothing densities of genes in R
  I have a table with chromosomes bins of 1Mb size and the density of expressed genes. I would like...
• counting number of variants within specified windows
  I have two tab delimited files. Each has two columns, one for chromosome and one for variant co-o...
• Which hypothesis test I can use in this case?
  I have two populations, CEU and CHS, and 50 individuals for each populations. I split each chro...
• Interpreting sliding windows in Ka/Ks analyses
  Dear Biostars users,   I am running selection analysis on one gene on different species. I have...
• How do I multithread PoPoolation?
  I'm trying to call nucleotide diversity for a pool-seq dataset using **PoPoolation's** `Variance-...
• Choosing Window Size (Sliding Window Approach) During Cnv Analysis By Readdepth Approach
  Dear all, There are some very good tools for CNV analysis (ReadDepth, mrCaNaVar etc) using read ...
• How To Carry Out Dfr Sliding Window Analysis?
  Hi, dear members, I want to use DFR sliding window analysis to compute total T scores and differe...
• Filtering on absolute gene expression level in microarrays
  Hello all, I have a normalized microarray dataset (affy_hg_u133_plus_2) of 23100 genes and 582 i...