Incomplete titles in the BLAST output
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5.7 years ago
Lucila ▴ 20

Hi all,

I need help with the BLAST output. The sequences of my database have spaces in the titles, and in the results the titles are shown until that space and I am losing the rest of the title. Is there any parameter or output format to use and obtain the complete titles in the output, without modifying the original titles?

Thank you so much!

blast • 1.3k views
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With outfmt 6 you can add stitle

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or if you have more space-separated fields, use salltitle.

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Thanks! And is there any similar tool to use with the query titles? To extract the query titles without spaces?

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-outfmt '6 std stitle', column 12 will be the subject`s name, or also you can modify you DB with sed command on linux, replacing " " by "_".

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