Question: Smoothing densities of genes in R
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gravatar for User000
2.9 years ago by
User000270
User000270 wrote:

I have a table with chromosomes bins of 1Mb size and the density of expressed genes. I would like to smooth the densities and get the values. Could somebody suggest how to do that?

rna-seq R • 906 views
ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by User000270
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gravatar for EVR
2.9 years ago by
EVR570
Earth
EVR570 wrote:

What do you mean by smoothing? Have you tried making density plot by taking log2(values)?

ADD COMMENTlink written 2.9 years ago by EVR570

I am not sure, but may be something like this? fit <- ksmooth(genes$pos, genes$value, bandwidth = 10^6) But I also want to take into account each chromosome

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by User000270
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