Question: How to extract the numerical expression values for plotting time series curves for this NCBI GEO dataset using the GPL19046 Yeast_WG chip / platform?
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2.6 years ago by
tfhahn50
tfhahn50 wrote:

How to extract the numerical expression values for plotting time series curves for this NCBI GEO dataset using the GPL19046 Yeast_WG chip / platform?

I would like to plot the mRNA expression time series curves based on the data of the following NCBI GEO dataset.

Series GSE60112 The title of this dataset is:

Time-series DNA occupancy during the yeast respiratory cycle

The URL of this dataset is:

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE60112

The citation of the publication, which goes along with this dataset, is:

Cornelia Amariei, Rainer Machné, Viktor Stolc, Tomoyoshi Soga, Masaru Tomita and Douglas B. Murray. Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program. Microbial Cell, 2014, Vol. 1, No. 9, pp. 279 – 288

This publication is freely available at http://microbialcell.com/researcharticles/time-resolved-dna-occupancy-dynamics-during-the-respiratory-oscillation-uncover-a-global-reset-point-in-the-yeast-growth-program/

My problem is that the platform / chip seems to be

GPL19046 Yeast_WG chip

What do I need to do to extract the numerical gene expression values from this dataset, which are most meaningful for plotting time series curves?

Thanks a lot

Thomas

ADD COMMENTlink modified 2.6 years ago by harold.smith.tarheel4.4k • written 2.6 years ago by tfhahn50
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2.6 years ago by
United States
harold.smith.tarheel4.4k wrote:

See the answer in this thread.

ADD COMMENTlink written 2.6 years ago by harold.smith.tarheel4.4k
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