How to extract the numerical expression values for plotting time series curves for this NCBI GEO dataset using the GPL19046 Yeast_WG chip / platform?
1
0
Entering edit mode
4.1 years ago
tfhahn ▴ 50

How to extract the numerical expression values for plotting time series curves for this NCBI GEO dataset using the GPL19046 Yeast_WG chip / platform?

I would like to plot the mRNA expression time series curves based on the data of the following NCBI GEO dataset.

Series GSE60112 The title of this dataset is:

Time-series DNA occupancy during the yeast respiratory cycle

The URL of this dataset is:

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE60112

The citation of the publication, which goes along with this dataset, is:

Cornelia Amariei, Rainer Machné, Viktor Stolc, Tomoyoshi Soga, Masaru Tomita and Douglas B. Murray. Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program. Microbial Cell, 2014, Vol. 1, No. 9, pp. 279 – 288

This publication is freely available at http://microbialcell.com/researcharticles/time-resolved-dna-occupancy-dynamics-during-the-respiratory-oscillation-uncover-a-global-reset-point-in-the-yeast-growth-program/

My problem is that the platform / chip seems to be

GPL19046 Yeast_WG chip

What do I need to do to extract the numerical gene expression values from this dataset, which are most meaningful for plotting time series curves?

Thanks a lot

Thomas

Microarray Annotation NCBI-GEO-dataset • 986 views
ADD COMMENT
0
Entering edit mode
4.1 years ago

See the answer in this thread.

ADD COMMENT

Login before adding your answer.

Traffic: 2338 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6