Question: How to designate a sample's subtype based on microarray model without microarray but RNAseq
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gravatar for agicict
2.3 years ago by
agicict140
Korea, Republic Of
agicict140 wrote:

Hello.

I am studying glioblastoma (GBM) and its four subtypes were established based on microarray data (TCGA 2010).

I have only RNA-seq data without microarray and want to know subtypes of my samples individually.

As far as I know, there is no paper where authors predict GBM's four subtypes based on RNA-seq data.

I would like to know any method or paper which can solve my issue.

Thank you.

rna-seq microarray subtype • 639 views
ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by agicict140

Maybe you can start with/use principal components analysis?

ADD REPLYlink written 2.3 years ago by theobroma221.1k

How did the array paper do it?

ADD REPLYlink written 2.3 years ago by theobroma221.1k
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