Dear all,
I am new to RNA-Seq analysis. I've obtained RNA-Seq data in wig format. Here is an example:
bedGraph section chr1:11624-117322
chr1 11624 11675 0.00551354 chr1 11680 11710 0.00551354 chr1 11710 11711 0.0110271
I have a list of genes for which I would like to find out if there is any difference in terms of exon usage between two conditions.
Would you have any tips on how to proceed with such analysis?
After some googling I came across the "DEXSeq" R package. Unfortunately, the manual does not explain how to use with the data in the format I have. Is this at all possible?
Many thanks!
Thank you so much for the clarification!