I am trying to call variants from whole exome paired end sequences aligned to HG38p7 using the Freebayes variant caller. As it is a general recommendation to perform BQSR before any type of variant calling, I was wondering is it necessary to perform the BQSR before calling variants with freebayes?
Question: Is it necessery to perform GATK-BQSR before performing variant calling using freebayes.
19 months ago by
sktbanerjee1 • 30
sktbanerjee1 • 30 wrote:
ADD COMMENT • link •
Please log in to add an answer.
Powered by Biostar version 2.3.0
Traffic: 1698 users visited in the last hour