I am trying to call variants from whole exome paired end sequences aligned to HG38p7 using the Freebayes variant caller. As it is a general recommendation to perform BQSR before any type of variant calling, I was wondering is it necessary to perform the BQSR before calling variants with freebayes?
Question: Is it necessery to perform GATK-BQSR before performing variant calling using freebayes.
14 months ago by
sktbanerjee1 • 30
sktbanerjee1 • 30 wrote:
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