Is there a specific option to set when run macs2 in broad mode in order to get summit location? I want to call broad peaks for histone modification, when I run the following command:
macs2 callpeak -t my_sample.bed -n name -g 1.4e9 --broad --broad-cutoff 0.05 --nomodel --nolambda
The output files don't have NAME_summits.bed and there is no column of "absolute peak summit position". Did I use macs2 in wrong way?
Thanks for your help!