Question: De novo pacBio genome assembly: How to polish data without quiver?
0
gravatar for Rob
16 months ago by
Rob90
Rob90 wrote:

I am currently working on some de novo genome assembly with pacBio data. I used Canu for assembly but I didn't have access to quiver (or arrow) for data polishing. What can I do now? I can't find any tools for replace quiver, so I'm a little bit stuck...

Thanks !

ADD COMMENTlink modified 16 months ago by Alex20 • written 16 months ago by Rob90
0
gravatar for Alex
16 months ago by
Alex20
America
Alex20 wrote:

Hei,Pacbio have there assembly pipeline ,if you use the canu ,just use the canu to assembly subreads fasta,needn't to polish the reads,canu can do it !

Alex

ADD COMMENTlink written 16 months ago by Alex20

Well, I use Canu alone, and it don't contain a polisher. I wll try to use the pacBio polisher.

ADD REPLYlink written 16 months ago by Rob90

Did you find anything for this?

ADD REPLYlink written 3 days ago by Vijay Lakhujani2.8k
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