Question: De novo pacBio genome assembly: How to polish data without quiver?
0
gravatar for Rob
8 months ago by
Rob90
Rob90 wrote:

I am currently working on some de novo genome assembly with pacBio data. I used Canu for assembly but I didn't have access to quiver (or arrow) for data polishing. What can I do now? I can't find any tools for replace quiver, so I'm a little bit stuck...

Thanks !

ADD COMMENTlink modified 8 months ago by Alex20 • written 8 months ago by Rob90
0
gravatar for Alex
8 months ago by
Alex20
America
Alex20 wrote:

Hei,Pacbio have there assembly pipeline ,if you use the canu ,just use the canu to assembly subreads fasta,needn't to polish the reads,canu can do it !

Alex

ADD COMMENTlink written 8 months ago by Alex20

Well, I use Canu alone, and it don't contain a polisher. I wll try to use the pacBio polisher.

ADD REPLYlink written 8 months ago by Rob90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1463 users visited in the last hour