Question: De novo pacBio genome assembly: How to polish data without quiver?
gravatar for Rob
8 months ago by
Rob90 wrote:

I am currently working on some de novo genome assembly with pacBio data. I used Canu for assembly but I didn't have access to quiver (or arrow) for data polishing. What can I do now? I can't find any tools for replace quiver, so I'm a little bit stuck...

Thanks !

ADD COMMENTlink modified 8 months ago by Alex20 • written 8 months ago by Rob90
gravatar for Alex
8 months ago by
Alex20 wrote:

Hei,Pacbio have there assembly pipeline ,if you use the canu ,just use the canu to assembly subreads fasta,needn't to polish the reads,canu can do it !


ADD COMMENTlink written 8 months ago by Alex20

Well, I use Canu alone, and it don't contain a polisher. I wll try to use the pacBio polisher.

ADD REPLYlink written 8 months ago by Rob90
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