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Question: De novo pacBio genome assembly: How to polish data without quiver?
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gravatar for Rob
19 months ago by
Rob • 90
Rob • 90 wrote:

I am currently working on some de novo genome assembly with pacBio data. I used Canu for assembly but I didn't have access to quiver (or arrow) for data polishing. What can I do now? I can't find any tools for replace quiver, so I'm a little bit stuck...

Thanks !
assembly pacbio polishing sequencing quiver • 1.2k views
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modified 19 months ago by Alex • 20 • written 19 months ago by Rob • 90
0
gravatar for Alex
19 months ago by
Alex • 20
America
Alex • 20 wrote:

Hei,Pacbio have there assembly pipeline ,if you use the canu ,just use the canu to assembly subreads fasta,needn't to polish the reads,canu can do it !

Alex
ADD COMMENT • link written 19 months ago by Alex • 20

Well, I use Canu alone, and it don't contain a polisher. I wll try to use the pacBio polisher.

ADD REPLY • link written 19 months ago by Rob • 90

Did you find anything for this?

ADD REPLY • link written 3 months ago by Vijay Lakhujani ♦ 3.1k
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