did some one test DiscoSnp++ with RAD tag sequencing?
I'm dealing with short reads...about 35 bp.
Thank you for your help,
Have you looked into DiscoSNP-RAD? It seems like the authors have adapted their DiscoSnp++ application towards processing RAD-seq data. The paper can be found here: https://www.biorxiv.org/content/early/2017/11/09/216747
Hope this helps,
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