Question: ploting a network of mRNAs and miRNAs
gravatar for Angel
2.5 years ago by
Angel3.5k wrote:


I have expression profiles of 192 miRNAs and experimentaly validated targets in two separate txt files, how I can plot which miRNA connected with which mRNA via a network??? I tried parmigene R package but depending on miRNAs and mRNAs placed in row network contains only miRNAs or mRNA. then what to do please???

target mirna R • 815 views
ADD COMMENTlink modified 2.5 years ago by andrew.j.skelton735.8k • written 2.5 years ago by Angel3.5k
gravatar for andrew.j.skelton73
2.5 years ago by
andrew.j.skelton735.8k wrote:

This sounds like a visualisation problem, so Cytoscape seems appropriate, unless you want to stick with R, in which case I'd suggest iGraph.

ADD COMMENTlink written 2.5 years ago by andrew.j.skelton735.8k

I would recommend igraph as well and found this tutorial extremely useful:

ADD REPLYlink written 2.5 years ago by Dave Tang190
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