Entering edit mode
7.6 years ago
csardas
•
0
Hi all,
I have 2 paired VCF files (normal and tumor sample). Is it possible to extract somatic variants from VCF directly? or I have to go back to bam files and run Mutect or VarScan?
So essentially you would want to find variants which are present in the tumor.vcf and not in the normal.vcf?
How did you finally end up doing it?