Entering edit mode
7.1 years ago
jsaray
•
0
Hi All,
At the end of this website :
https://confluence.broadinstitute.org/display/GDAC/Methylation+Preprocessor
At the Clustering section is stated that "The default cutoff is .2, but it can be tuned based on the desired output file size".
I would want to tune this cutoff programatically, but I don't find how this can be achieved. I am using Python and I have :
rnaSEQ = firebrowse.Archives().StandardData(cohort='COADREAD',data_type='Methylation_Preprocess')
I reviewed all the parameters of StandardData action, but I don't find this cutoff parameter.
Best regards,
