Question: How to convert SBML or BioPAX format into KGML (KEGG) format
1
gravatar for reachtoskumar
2.6 years ago by
reachtoskumar10 wrote:

I need to convert SBML / BioPAX format files into KGML (KEGG) formats. I'm getting many converter which converts KGML (KEGG) into SBML or BioPAX. Please suggest any available tool or method to achieve the above.

kegg sbml biopax kgml • 1.1k views
ADD COMMENTlink modified 4 months ago by liuhaizhou0 • written 2.6 years ago by reachtoskumar10

Now, do you get a solution? I am meeting the same problem. If you have a solution, please tell me. Thank you.

ADD REPLYlink written 4 months ago by liuhaizhou0

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ADD REPLYlink written 4 months ago by Sej Modha4.5k
0
gravatar for mhucka
2.6 years ago by
mhucka50
California Institute of Technology
mhucka50 wrote:

I'm not aware of a ready-to-use tool to translate in this direction; however, the developers of KEGGtranslator tell me that internally, the software _does_ have the ability to read SBML and store it in an enhanced KGML form. KEGGtranslator is designed to read KGML and output SBML and other formats, which is the opposite direction of what you are asking, but if nothing else arises, perhaps it would be worth looking into the code and seeing if you can modify it to generate output in the direction you need?

ADD COMMENTlink written 2.6 years ago by mhucka50
0
gravatar for liuhaizhou
4 months ago by
liuhaizhou0
liuhaizhou0 wrote:

Many thanks. While I am not good at code and I will try. Thanks again.

ADD COMMENTlink written 4 months ago by liuhaizhou0
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