Question: Differential Expression of illumina microarray data
0
gravatar for bio94
2.1 years ago by
bio9440
bio9440 wrote:

How to perform differential expression this Illumina Microarray GEO Dataset-GSE48624??? I'm want to perform differential expression analysis and get the list of up-regulated and down-regulated genes! Thank you

ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 2.1 years ago by bio9440
4

The Limma User Guide is an excellent read.

ADD REPLYlink written 2.1 years ago by h.mon24k
2

Another good starting point is the bioconductor workflow for microarray.

ADD REPLYlink written 2.1 years ago by WouterDeCoster38k
1

lumi?

ADD REPLYlink written 11 months ago by cpad011211k
1
gravatar for said3427
17 months ago by
said342780
Mexico
said342780 wrote:

You can use GEO2R and get the results in a minute.

https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE48624

ADD COMMENTlink written 17 months ago by said342780
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