Question: Hi-C contact probability
1
gravatar for int11ap1
2.7 years ago by
int11ap1380
Barcelona
int11ap1380 wrote:

I was wondering, if I have a Hi-C matrices and the average ICE-normalized interaction vs. genomic distance, how can I create a plot like the following one?

enter image description here

I created something similar:

enter image description here

but it's not contact probability. I want to draw as well the fractal lineal regression.

Thanks

hi-c • 1.2k views
ADD COMMENTlink modified 2.7 years ago • written 2.7 years ago by int11ap1380

Hi,

can you solve this problems? I have trouble in this figure. I read the paper about Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome, But I am more confused. So, if you could solve this, could you add a comment? Or how to calculate the frequency is helpful.

ADD REPLYlink written 9 months ago by Francis10
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