ballgown installation problem
0
0
Entering edit mode
7.1 years ago

can somebody please help me in installing ballgown properly.... i am using these two steps....

source("http://bioconductor.org/biocLite.R")

biocLite("ballgown") still it showing ballgown package does not exist...

RNA-Seq • 2.1k views
ADD COMMENT
0
Entering edit mode

See Ballgown page from bioconductor

source("https://bioconductor.org/biocLite.R")
biocLite("ballgown")

Does that https make a difference? Which version of R and Bioconductor do you have?

It's best to post the output of sessionInfo()

ADD REPLY
0
Entering edit mode

In many clusters, the https connections are refused by R. I'm not sure that will change things! (I always have to remove the "s" when I install R packages.

ADD REPLY
0
Entering edit mode

What is exactly the error message (full line, including everything)? I just tried and installed ballgown without any issue.

ADD REPLY

Login before adding your answer.

Traffic: 2108 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6