REST API to run pipeline ( not Galaxy)
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7.6 years ago
sacha ★ 2.4k

I wonder if a framework exists to launch a pipeline / script from a user interface. I mean , something more general than galaxy. I imagine a server with REST endpoint to launch a pipeline and some websockets to monitor your run on live. The UI could be generate from Json-form specification.

interface pipeline galaxy launcher • 2.2k views
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I mean , something more general than galaxy

well galaxy... https://galaxyproject.org/develop/api/

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Thanks, but i would like to know if alternative softwares exists and compare them. I m not sure galaxy provide websocket features. Similar tools should exist outside bioinformatics world.

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You can use bioblend and not have to care about how the actual web API works. That allows you to check on a job's status.

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What Pierre said. What you're describing is a stripped down version of Galaxy without any of the framework to aid reproducibility.

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7.6 years ago
sacha ★ 2.4k

I found BioBoxes and BioContainers as pipeline containers. Would be awesome now to find a GUI lancher.

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I am really sorry but that is again ... Galaxy. http://biocontainers.pro/docs/faqs/galaxy-biocontainers/

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Does any from this list have GUI for running biocontainers?

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