Question: To know the breast cancer subtypes and molecular types from TCGA data
1
gravatar for Ashmita
3.6 years ago by
Ashmita10
Ashmita10 wrote:

Hello,

I'm using the TCGA data related to Breast invasive carcinoma (BRCA).

I downloaded the clinical data that contains the clinical feature of each patient from TCGA.

My problem is that I can't find the subtypes of breast cancer and their molecular subtypes also. For example Luminal A, Luminal B, HER2+ve and Basal are the breast cancer subtypes and ER, PR, HER2 are their molecular subtypes.

Where can I find the subtypes information of BRCA for TCGA data? Does it exist at all? Please help me in this regard.

Thanks Ashmita

firebrowse gdc tcga clinical • 3.5k views
ADD COMMENTlink modified 3.6 years ago • written 3.6 years ago by Ashmita10

There are perhaps other ways of looking at this. Scrolls in the tables over to right to see info you want.
http://www.cbioportal.org/study?id=brca_sanger#clinical
http://www.cbioportal.org/study?id=brca_tcga_pub#clinical
http://www.cbioportal.org/study?id=brca_tcga_pub2015#clinical

ADD REPLYlink modified 3.6 years ago • written 3.6 years ago by genomax91k

Hi,

Were you able to find the subtype of the Breast Cancer from the data provided in the GDC portal?

Thanks, RP

ADD REPLYlink written 7 months ago by rp0
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