Question: To know the breast cancer subtypes and molecular types from TCGA data
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gravatar for Ashmita
14 months ago by
Ashmita0
Ashmita0 wrote:

Hello,

I'm using the TCGA data related to Breast invasive carcinoma (BRCA).

I downloaded the clinical data that contains the clinical feature of each patient from TCGA.

My problem is that I can't find the subtypes of breast cancer and their molecular subtypes also. For example Luminal A, Luminal B, HER2+ve and Basal are the breast cancer subtypes and ER, PR, HER2 are their molecular subtypes.

Where can I find the subtypes information of BRCA for TCGA data? Does it exist at all? Please help me in this regard.

Thanks Ashmita

firebrowse gdc tcga clinical • 1.1k views
ADD COMMENTlink modified 14 months ago • written 14 months ago by Ashmita0

There are perhaps other ways of looking at this. Scrolls in the tables over to right to see info you want.
http://www.cbioportal.org/study?id=brca_sanger#clinical
http://www.cbioportal.org/study?id=brca_tcga_pub#clinical
http://www.cbioportal.org/study?id=brca_tcga_pub2015#clinical

ADD REPLYlink modified 14 months ago • written 14 months ago by genomax49k
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