Question: Upgrade Ubuntu 16.04 to Bio Linux 8
1
gravatar for Sam
23 months ago by
Sam10
Brazil
Sam10 wrote:

Hello, I'm newbie to linux and I was trying to upgrade my actual version of Ubuntu 16.04.1 to Bio Linux 8. But after doing the tutorial on the website, this error appears:

dpkg: Não irá fazer downgrade de bio-linux-keyring de 7 para 6, a saltar Lendo listas de pacotes... Pronto Construindo árvore de dependências
Lendo informação de estado... Pronto software-properties-common is already the newest version (0.96.20.5). 0 pacotes atualizados, 0 pacotes novos instalados, 0 a serem removidos e 3 não atualizados. Trying to run graphical R mirror chooser. If this fails we'll default to the Bristol one. Traceback (most recent call last): File "pick_cran_mirror.py", line 12, in <module> from gi.repository import Gtk, Gdk ImportError: No module named gi.repository Adding PPA repository sources. If this fails it may indicate a web proxy configuration issue. gpg: chaveiro /tmp/tmpe2grs_dc/secring.gpg' criado gpg: chaveiro/tmp/tmpe2grs_dc/pubring.gpg' criado gpg: requisitando chave 5BA15160 de servidor hkp - keyserver.ubuntu.com gpg: /tmp/tmpe2grs_dc/trustdb.gpg: banco de dados de confiabilidade criado gpg: chave 5BA15160: chave pública "Launchpad PPA for NEBC Team" importada gpg: Número total processado: 1 gpg: importados: 1 (RSA: 1) OK gpg: chaveiro /tmp/tmph979xens/secring.gpg' criado gpg: chaveiro/tmp/tmph979xens/pubring.gpg' criado gpg: requisitando chave B04C661B de servidor hkp - keyserver.ubuntu.com gpg: /tmp/tmph979xens/trustdb.gpg: banco de dados de confiabilidade criado gpg: chave B04C661B: chave pública "Launchpad PPA for marutter" importada gpg: Número total processado: 1 gpg: importados: 1 (RSA: 1) OK gpg: chaveiro /tmp/tmpyl92di3c/secring.gpg' criado gpg: chaveiro/tmp/tmpyl92di3c/pubring.gpg' criado gpg: requisitando chave 0A53F9FD de servidor hkp - keyserver.ubuntu.com gpg: /tmp/tmpyl92di3c/trustdb.gpg: banco de dados de confiabilidade criado gpg: chave 0A53F9FD: chave pública "Launchpad PPA for x2go" importada gpg: Número total processado: 1 gpg: importados: 1 (RSA: 1) OK Atingido:1 http://br.archive.ubuntu.com/ubuntu xenial InRelease Obter:2 http://br.archive.ubuntu.com/ubuntu xenial-updates InRelease [102 kB]
Obter:3 http://br.archive.ubuntu.com/ubuntu xenial-backports InRelease [102 kB] Ign:4 http://dl.google.com/linux/chrome/deb stable InRelease
Obter:5 http://br.archive.ubuntu.com/ubuntu xenial-updates/main amd64 DEP-11 Metadata [288 kB] Ign:6 http://dl.google.com/linux/talkplugin/deb stable InRelease
Atingido:7 http://dl.google.com/linux/chrome/deb stable Release
Obter:8 http://br.archive.ubuntu.com/ubuntu xenial-updates/main DEP-11 64x64 Icons [186 kB] Atingido:10 http://dl.google.com/linux/talkplugin/deb stable Release
Atingido:11 http://ppa.launchpad.net/marutter/c2d4u/ubuntu xenial InRelease
Obter:12 http://br.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 DEP-11 Metadata [160 kB] Obter:14 http://security.ubuntu.com/ubuntu xenial-security InRelease [102 kB]
Obter:15 http://br.archive.ubuntu.com/ubuntu xenial-updates/universe DEP-11 64x64 Icons [172 kB] Obter:16 http://br.archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 DEP-11 Metadata [2.520 B] Obter:17 http://br.archive.ubuntu.com/ubuntu xenial-backports/main amd64 DEP-11 Metadata [3.324 B] Ign:18 http://nebc.nerc.ac.uk/bio-linux unstable InRelease
Ign:19 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial InRelease
Atingido:20 http://ppa.launchpad.net/x2go/stable/ubuntu xenial InRelease
Atingido:21 http://nebc.nerc.ac.uk/bio-linux unstable Release
Ign:23 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial Release
Ign:24 http://www.stats.bris.ac.uk/R//bin/linux/ubuntu trusty/ InRelease
Ign:25 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 Packages Obter:26 http://security.ubuntu.com/ubuntu xenial-security/main amd64 DEP-11 Metadata [54,2 kB] Ign:27 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main i386 Packages Atingido:28 http://www.stats.bris.ac.uk/R//bin/linux/ubuntu trusty/ Release
Ign:30 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main all Packages Obter:31 http://security.ubuntu.com/ubuntu xenial-security/main DEP-11 64x64 Icons [46,9 kB] Obter:32 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 DEP-11 Metadata [32,2 kB] Obter:33 http://security.ubuntu.com/ubuntu xenial-security/universe DEP-11 64x64 Icons [37,0 kB] Ign:34 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt_BR Ign:35 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt Ign:36 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-en Ign:37 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 DEP-11 Metadata Ign:38 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main DEP-11 64x64 Icons Ign:25 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 Packages Ign:27 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main i386 Packages Ign:30 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main all Packages Ign:34 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt_BR Ign:35 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt Ign:36 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-en Ign:37 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 DEP-11 Metadata Ign:38 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main DEP-11 64x64 Icons Ign:25 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 Packages Ign:27 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main i386 Packages Ign:30 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main all Packages Ign:34 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt_BR Ign:35 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt Ign:36 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-en Ign:37 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 DEP-11 Metadata Ign:38 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main DEP-11 64x64 Icons Ign:25 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 Packages Ign:27 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main i386 Packages Ign:30 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main all Packages Ign:34 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt_BR Ign:35 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt Ign:36 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-en Ign:37 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 DEP-11 Metadata Ign:38 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main DEP-11 64x64 Icons Ign:25 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 Packages Ign:27 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main i386 Packages Ign:30 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main all Packages Ign:34 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt_BR Ign:35 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt Ign:36 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-en Ign:37 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 DEP-11 Metadata Ign:38 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main DEP-11 64x64 Icons Err:25 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 Packages 404 Not Found Ign:27 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main i386 Packages Ign:30 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main all Packages Ign:34 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt_BR Ign:35 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-pt Ign:36 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main Translation-en Ign:37 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main amd64 DEP-11 Metadata Ign:38 http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial/main DEP-11 64x64 Icons Baixados 1.289 kB em 12s (99,3 kB/s) Lendo listas de pacotes... Pronto N: Skipping acquire of configured file 'main/binary-i386/Packages' as repository 'http://dl.google.com/linux/chrome/deb stable InRelease' doesn't support architecture 'i386' W: The repository 'http://ppa.launchpad.net/nebc/bio-linux/ubuntu xenial Release' does not have a Release file. N: Data from such a repository can't be authenticated and is therefore potentially dangerous to use. N: See apt-secure(8) manpage for repository creation and user configuration details. E: Falhou ao buscar http://ppa.launchpad.net/nebc/bio-linux/ubuntu/dists/xenial/main/binary-amd64/Packages 404 Not Found E: Falhou o download de alguns ficheiros de índice. Foram ignorados ou os antigos foram usados em seu lugar.

linux bio • 2.1k views
ADD COMMENTlink modified 21 months ago • written 23 months ago by Sam10
7

You mean downgrade to Biolinux. Biolinux is based on Ubuntu 14.04 version. I recommend not doing it.

ADD REPLYlink written 23 months ago by fhsantanna430
3

What do you mean upgrade? BioLinux is a specific alternative Linux distribution, you should be installing it as anew image from scratch no?

ADD REPLYlink written 23 months ago by jrj.healey11k

Thank you all! I finally understand that Biolinux is already passed out! haha

ADD REPLYlink written 21 months ago by Sam10

Please use ADD COMMENT or ADD REPLY to answer to previous reactions, as such this thread remains logically structured and easy to follow. I have now moved your post but as you can see it's not optimal. Adding an answer should only be used for providing a solution to the question asked.

ADD REPLYlink written 21 months ago by WouterDeCoster36k
0
gravatar for jrj.healey
23 months ago by
jrj.healey11k
United Kingdom
jrj.healey11k wrote:

If you want a linux distro with bioinformatics support baked in, consider checking out the Genomics Virtual Laboratory (GVL). Searches for GVLv4 should yield something useful.

ADD COMMENTlink written 23 months ago by jrj.healey11k
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