Question: phylonet input tree with bootstrap
gravatar for lifang5389
2.8 years ago by
lifang53890 wrote:

I am attemping to use phylonet to investigate the gene flow among species. My input are gene trees with branch length and bootstraps. I have tried three formats of the same input trees but got different output network, without any error report. So could someone tell me which format is the correct one for phylonet? Thanks ! The three formats I used as below:

  1. ((SpeA : BL, Spe: BL)BL : BS , SpeC : BL); ### BL : branch length; BS : bootstrap
  2. ((SpeA : BL, Spe: BL) : BL : BS , SpeC : BL); ### add a ":" after the ")"
  3. ((SpeA : BL, Spe: BL) : BL , SpeC : BL); ### remove the bootstrap

only format 2 got the "#H1" in the output network.

ADD COMMENTlink modified 2.7 years ago by Biostar ♦♦ 20 • written 2.8 years ago by lifang53890

I am afraid but I've never used phylonet. I don't know if you have to use it or you can choose another software. I recommend you to use Figtree, trex .. but in this web site you can find your solution. I hope these resources could help you. ;)

ADD REPLYlink written 2.7 years ago by Lila M 800
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