Hi, everyone. I download a SRA dataset (SRR645175) from SRA database. Now I want convert it to BAM format. As far as I know I should use sam-dump to convert it to SAM format than to BAM with samtools. Here is the problem. When I execute sam-dump SRR645175 it takes only seconds and generates nothing. Then I tried sam-dump SRR645175 --output-file SRR645175.sam. The output is an empty file. Can someone help me to solve this problem? Also If the issue is inevitable is it OK to take a roundabout like converting the SRA data to Fasta then to BAM?
Question: sam-dump output is empty
2.8 years ago by
592081962 • 10
592081962 • 10 wrote:
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