Question: chipseq data analysis
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gravatar for praveenhcu131
3.6 years ago by
praveenhcu1310 wrote:

can anybody please tell me how to implement the logistic regression on chip seq data after extracting features like distance from tss and peak breadth and peak count

chip-seq R • 718 views
ADD COMMENTlink modified 3.6 years ago by Carlo Yague5.0k • written 3.6 years ago by praveenhcu1310
0
gravatar for Carlo Yague
3.6 years ago by
Carlo Yague5.0k
Canada
Carlo Yague5.0k wrote:

You can do it in R with the glm function. If you google around, you will find many examples of such regressions.

ADD COMMENTlink written 3.6 years ago by Carlo Yague5.0k

please tell me how to give input file

ADD REPLYlink written 3.6 years ago by praveenhcu1310

This is going to be hard if you don't know how to use R because it takes a bit of learning. Alternatively, doing a logistic regression is also possible with Excel.

If you want to stick with R, you can usually load any kind of text data using read.table().

ADD REPLYlink written 3.6 years ago by Carlo Yague5.0k
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