DARTseq methods on mammals

Question

[Barby]

Hi there,

I need some suggestions about a methodology that I recently adopted. I have generated DARTseq data on wildebeest. This is to try and find association between colour (golden for example) and SNPs. My main question is how easy would it be to map these allele sequences back to a reference genome (probably the cattle genome in this case). And also is the DARTseq method, the right one to use?

Thanks