How identify zero fold degradation sites

Question

[yixinrufeng]

Hi all As I want to identify all the zero fold degradation sites in my genome, I have got annotation file (gff3) and genome sequence, could you please tell me how to identify the sites that are zero fold degradation sites. As I am a new man to Python or Perl, I can not write a script to do that, Could you please help me?

Thanks

[Pierre Lindenbaum]

what is a "zero fold degradation" site ?

[yixinrufeng]

oh, it is zero fold degenerate sites

[aditi.qamra]

Can you give us an example of what you mean and what you are trying to achieve

Answer 1

[Sergey Naumenko]

"Zero fold degenerate site" looks like an incorrect term. The correct ones are 'fourfold degenerate' and 'twofold degenerate': Genetic code. The corresponding question has been already answered for example, here