Question: deepTools white dots on black background
0
gravatar for Kasthuri
3.6 years ago by
Kasthuri270
United States
Kasthuri270 wrote:

When running the heatmap in deepTools I get the black background and white dots at the bottom even when generating the matrix using '–missingDataAsZero' and '–skipZeros' in computeMatrix. I am attaching the figure. Any help will be appreciated.

heatmap

Thanks

Kasthuri

deeptools • 821 views
ADD COMMENTlink modified 8 months ago by Biostar ♦♦ 20 • written 3.6 years ago by Kasthuri270
0
gravatar for Kasthuri
3.6 years ago by
Kasthuri270
United States
Kasthuri270 wrote:

It appears duplicated regions in the bed file were causing this. Once I removed them the plot seems to be just fine.

ADD COMMENTlink written 3.6 years ago by Kasthuri270
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