Where can I find a sample analysis pipeline for DNA?
1
0
Entering edit mode
7.5 years ago
andrea • 0

I want to learn how to develop a pipeline from data from TCGA or some other cancer genomics data. I know the general tools to use like picard and bwa. However, does someone have a good pipeline I can look at?

next-gen WES WGS SNP sequencing • 1.7k views
ADD COMMENT
1
Entering edit mode
7.5 years ago
geocarvalho ▴ 370

More examples of pipeline that you can extract some analysis are SpeedSeq, bcbio and IMPACT-pipeline.

ADD COMMENT

Login before adding your answer.

Traffic: 1520 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6