convert VCF into bayescan format
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4.7 years ago
guillaume.rbt ▴ 930

Hi all,

I am trying to use bayescan on a set of haploid SNPs markers I have on several samples.

To do that I need to convert my multiVCF file into bayescan format.

Would anyone know a way to do that? (I have tried PGDspider but it doesn't work... )

Thanks,

Guillaume

vcf bayescan • 2.6k views
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Entering edit mode
4.7 years ago
ivivek_ngs ★ 5.1k

You should be able to find your answer here

What I know is a 2 step conversion. VCF -> PGD -> Bayescan

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thanks, Unfortunately the VCF -> PGD step isn't working, I don't know why

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