Question: convert VCF into bayescan format
0
gravatar for guillaume.rbt
2.0 years ago by
guillaume.rbt540
France
guillaume.rbt540 wrote:

Hi all,

I am trying to use bayescan on a set of haploid SNPs markers I have on several samples.

To do that I need to convert my multiVCF file into bayescan format.

Would anyone know a way to do that? (I have tried PGDspider but it doesn't work... )

Thanks,

Guillaume

bayescan vcf • 1.0k views
ADD COMMENTlink modified 2.0 years ago by ivivek_ngs4.8k • written 2.0 years ago by guillaume.rbt540
2
gravatar for ivivek_ngs
2.0 years ago by
ivivek_ngs4.8k
Seattle,WA, USA
ivivek_ngs4.8k wrote:

You should be able to find your answer here

What I know is a 2 step conversion. VCF -> PGD -> Bayescan

ADD COMMENTlink written 2.0 years ago by ivivek_ngs4.8k

thanks, Unfortunately the VCF -> PGD step isn't working, I don't know why

ADD REPLYlink written 2.0 years ago by guillaume.rbt540
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