Question: bedtools shuffle with adjustment of GC ratio
2
Shicheng Guo • 8.5k wrote:
Hi All,
Is there any script which can be used for bedtools shuffle
and can be applied to ‘GC' ratio control/adjustment ?
I want to random re-sampling same genomic regions with same length distribution and similar 'GC' contents.
Perl script will be preferred.
Thanks.
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modified 3.9 years ago
by
ivivek_ngs • 5.1k
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written
3.9 years ago by
Shicheng Guo • 8.5k
Hi Dr. Guo,
Wondering if you have found a feasible solution? Or how to define the GC% range? I met the same question too.
Thank you for your time.