Entering edit mode
7.0 years ago
mona
▴
10
how to solve the error of :"Error in cor(dataset, method = estimator, use = "complete.obs") : no complete element pairs" befor using build.mim function in minet package
please check; your genes should place in columns and samples in rows.
I think you read your original file with
row.names = 1
simply read your file
then
the columns contain the genes and rows have the samples .and while reading my file I didn't use row.names=1
I have been facing the same issue. Have you found any solution yet ? If so could you please share how you overcame this problem ?
In your original data generaly genes are in row and samples in columns, if so; read your file so
then
and
Thank you for your reply.
i have been getting this error. whenever the gene list goes above 1000 . I have come to believe that this function is limited to a certain input range. I however want your outlook on this situation so that i can take a different route in my analysis.
my gene microarray dataset has 3264 genes across 6 timepoints
Add
use="complete.obs"
to build.mimThis is the output after adding the parameter