how to get the full mRNA from the coordinate of DNA and transcript id

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7.0 years ago

yancychy ▴ 10

Hi, I want to get the full RNA sequence from the known information as follow:

chr1 6582284 6582295 ENSG00000204859 . + ensembl_havana CDS 0 transcript_id "ENST00000377674"; gene_id "ENSG00000204859"; gene_name "ZBTB48";

chr1 6582284 6582295 ENSG00000204859 . + ensembl_havana exon . transcript_id "ENST00000377674"; gene_id "ENSG00000204859"; gene_name "ZBTB48";

But I can not find a proper tools and files to find the sequence of RNA.

Is anyone who know how to process? Many thanks.

RNA-Seq • 1.3k views

ADD COMMENT • link 7.0 years ago by yancychy ▴ 10

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BioMart for Ensembl Human genome. Find the video tutorial here.

ADD REPLY • link 7.0 years ago by GenoMax 141k

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Thank you very much. I will try it. I hope I can download the tools and files into local PC, and run the tools to process the bed files

ADD REPLY • link 7.0 years ago by yancychy ▴ 10

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What you are you exactly looking to do?

ADD REPLY • link 7.0 years ago by GenoMax 141k

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I want to get the corresponding RNA sequence for the short position information

ADD REPLY • link 7.0 years ago by yancychy ▴ 10

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