Question: CNV tools for hybridization vs. amplicon capture WES data
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gravatar for Jackie
5 months ago by
Jackie40
United States
Jackie40 wrote:

In this review paper (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-S11-S1), it lists several tools that are suitable for CNV detection with WES data (e.g., Control-FREEC, CoNIFER, XHMM, ExomeCNV, CONTRA), but it does not mention whether these tools work well with the hybridization or amplicon based capture WES data.

I am looking for some CNV tools that work for hybridization WES data. Can someone make some recommendations?

Thanks!

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