CNV tools for hybridization vs. amplicon capture WES data

Question

[Jackie]

In this review paper (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-S11-S1), it lists several tools that are suitable for CNV detection with WES data (e.g., Control-FREEC, CoNIFER, XHMM, ExomeCNV, CONTRA), but it does not mention whether these tools work well with the hybridization or amplicon based capture WES data.

I am looking for some CNV tools that work for hybridization WES data. Can someone make some recommendations?

Thanks!